2020 |
Conformation of sister chromatids in the replicated human genome.
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Nature |
Mitter, M., Gasser, C., Takacs, Z., Langer, CCH., Tang, W., Jessberger, G., Beales, CT., Neuner, E., Ameres, SL., Peters, JM., Goloborodko, A., Micura, R., Gerlich, DW. |
2020 |
Structure-function analysis of microRNA 3'-end trimming by Nibbler.
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Proc Natl Acad Sci U S A |
Xie, W., Sowemimo, I., Hayashi, R., Wang, J., Burkard, TR., Brennecke, J., Ameres, SL., Patel, DJ. |
2020 |
Determining mRNA Stability by Metabolic RNA Labeling and Chemical Nucleoside Conversion.
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Methods Mol Biol |
Herzog, VA., Fasching, N., Ameres, SL. |
2019 |
Publisher Correction: Sequencing cell-type-specific transcriptomes with SLAM-ITseq.
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Nat Protoc |
Matsushima, W., Herzog, VA., Neumann, T., Gapp, K., Zuber, J., Ameres, SL., Miska, EA. |
2019 |
Sequencing cell-type-specific transcriptomes with SLAM-ITseq.
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Nat Protoc |
Matsushima, W., Herzog, VA., Neumann, T., Gapp, K., Zuber, J., Ameres, SL., Miska, EA. |
2019 |
Time-Resolved Small RNA Sequencing Unravels the Molecular Principles of MicroRNA Homeostasis.
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Mol Cell |
Reichholf, B., Herzog, VA., Fasching, N., Manzenreither, RA., Sowemimo, I., Ameres, SL. |
2019 |
Structural basis for acceptor RNA substrate selectivity of the 3' terminal uridylyl transferase Tailor.
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Nucleic Acids Res |
Kroupova, A., Ivascu, A., Reimão-Pinto, MM., Ameres, SL., Jinek, M. |
2019 |
Quantification of experimentally induced nucleotide conversions in high-throughput sequencing datasets.
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BMC Bioinformatics |
Neumann, T., Herzog, VA., Muhar, M., von Haeseler, A., Zuber, J., Ameres, SL., Rescheneder, P. |
2018 |
Cell-type specific sequencing of microRNAs from complex animal tissues.
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Nat Methods |
Alberti, C., Manzenreither, RA., Sowemimo, I., Burkard, TR., Wang, J., Mahofsky, K., Ameres, SL., Cochella, L. |
2018 |
Small RNAs Are Trafficked from the Epididymis to Developing Mammalian Sperm.
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Dev Cell |
Sharma, U., Sun, F., Conine, CC., Reichholf, B., Kukreja, S., Herzog, VA., Ameres, SL., Rando, OJ. |
2018 |
Analysis of 3' End Modifications in microRNAs by High-Throughput Sequencing.
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Methods Mol Biol |
Reimão-Pinto, MM., Rodrigues-Viana, AM., Ameres, SL. |
2018 |
SLAM-seq defines direct gene-regulatory functions of the BRD4-MYC axis.
|
Science |
Muhar, M., Ebert, A., Neumann, T., Umkehrer, C., Jude, J., Wieshofer, C., Rescheneder, P., Lipp, JJ., Herzog, VA., Reichholf, B., Cisneros, DA., Hoffmann, T., Schlapansky, MF., Bhat, P., von Haeseler, A., Köcher, T., Obenauf, AC., Popow, J., Ameres, SL., Zuber, J. |
2018 |
SLAM-ITseq: sequencing cell type-specific transcriptomes without cell sorting.
|
Development |
Matsushima, W., Herzog, VA., Neumann, T., Gapp, K., Zuber, J., Ameres, SL., Miska, EA. |
2018 |
Positioning Europe for the EPITRANSCRIPTOMICS challenge.
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RNA Biol |
Jantsch, MF., Quattrone, A., O'Connell, M., Helm, M., Frye, M., Macias-Gonzales, M., Ohman, M., Ameres, S., Willems, L., Fuks, F., Oulas, A., Vanacova, S., Nielsen, H., Bousquet-Antonelli, C., Motorin, Y., Roignant, JY., Balatsos, N., Dinnyes, A., Baranov, P., Kelly, V., Lamm, A., Rechavi, G., Pelizzola, M., Liepins, J., Holodnuka Kholodnyuk, I., Zammit, V., Ayers, D., Drablos, F., Dahl, JA., Bujnicki, J., Jeronimo, C., Almeida, R., Neagu, M., Costache, M., Bankovic, J., Banovic, B., Kyselovic, J., Valor, LM., Selbert, S., Pir, P., Demircan, T., Cowling, V., Schäfer, M., Rossmanith, W., Lafontaine, D., David, A., Carre, C., Lyko, F., Schaffrath, R., Schwartz, S., Verdel, A., Klungland, A., Purta, E., Timotijevic, G., Cardona, F., Davalos, A., Ballana, E., O Carroll, D., Ule, J., Fray, R. |
2017 |
Thiol-linked alkylation of RNA to assess expression dynamics.
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Nat Methods |
Herzog, VA., Reichholf, B., Neumann, T., Rescheneder, P., Bhat, P., Burkard, TR., Wlotzka, W., von Haeseler, A., Zuber, J., Ameres, SL. |
2016 |
Molecular basis for cytoplasmic RNA surveillance by uridylation-triggered decay in Drosophila.
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EMBO J |
Reimão-Pinto, MM., Manzenreither, RA., Burkard, TR., Sledz, P., Jinek, M., Mechtler, K., Ameres, SL. |
2016 |
Genetic and mechanistic diversity of piRNA 3'-end formation.
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Nature |
Hayashi, R., Schnabl, J., Handler, D., Mohn, F., Ameres, SL., Brennecke, J. |
2015 |
Approaching the Golden Fleece a Molecule at a Time: Biophysical Insights into Argonaute-Instructed Nucleic Acid Interactions.
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Mol Cell |
Herzog, VA., Ameres, SL. |
2015 |
Uridylation of RNA Hairpins by Tailor Confines the Emergence of MicroRNAs in Drosophila.
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Mol Cell |
Reimão-Pinto, MM., Ignatova, V., Burkard, TR., Hung, JH., Manzenreither, RA., Sowemimo, I., Herzog, VA., Reichholf, B., Fariña-Lopez, S., Ameres, SL. |
2015 |
Selective Suppression of the Splicing-Mediated MicroRNA Pathway by the Terminal Uridyltransferase Tailor.
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Mol Cell |
Bortolamiol-Becet, D., Hu, F., Jee, D., Wen, J., Okamura, K., Lin, CJ., Ameres, SL., Lai, EC. |